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    Dr Deep Adhya

    University Position
    Research Associate

    Interests

    We have recently shown that the in-vitro neural tube structure, the ?neural rosette? is affected in autism induced pluripotent stem cell (iPSC) derived neurons. This suggests that an autism diagnosis has genetic and epigenetic influences affecting atypical iPSC neural differentiation (Adhya et al 2021). We are currently studying gene regulatory pathways that cause atypical neural rosette formation in autism, focussing on the role of histone modifications and transcriptional activation. Specifically, we are investigating the role of the MLL/SET protein family on early neurodevelopment. We are also studying effects of genes and epigenome on neuronal outcomes using a 3D cerebral organoid approach. Finally, we are looking at the role of autism-associated sex chromosomal genes and sex hormones on transcriptional and epigenetic processes during 3D cerebral organoid development.

    Key Publications

    Genetic correlates of phenotypic heterogeneity in autism.

    DOI: http://doi.org/10.1038/s41588-022-01072-5
    Journal: Nat Genet
    E-pub date: 1 Sep 2022
    Authors: V Warrier, X Zhang, P Reed, A Havdahl, TM Moore, F Cliquet, CS Leblond, T Rolland, A Rosengren, EU-AIMS LEAP, iPSYCH-Autism Working Group, Spectrum 10K and APEX Consortia, DH Rowitch, ME Hurles, DH Geschwind, AD Børglum, EB Robinson, J Grove, HC Martin, T Bourgeron, S Baron-Cohen

    Publications

    Polygenic and developmental profiles of autism differ by age at diagnosis.

    DOI: http://doi.org/10.1038/s41586-025-09542-6
    Journal: Nature
    E-pub date: 1 Oct 2025
    Authors: X Zhang, J Grove, Y Gu, CK Buus, LK Nielsen, SAS Neufeld, M Koko, DS Malawsky, EM Wade, E Verhoef, A Gui, L Hegemann, APEX Consortium, iPSYCH Autism Consortium, PGC-PTSD Consortium, DH Geschwind, NR Wray, A Havdahl, A Ronald, B St Pourcain, EB Robinson, T Bourgeron, S Baron-Cohen, AD Børglum, HC Martin, V Warrier

    Polygenic scores for autism are associated with reduced neurite density in adults and children from the general population.

    DOI: http://doi.org/10.1038/s41380-025-02927-z
    Journal: Mol Psychiatry
    E-pub date: 31 Aug 2025
    Authors: Y Gu, E Maria-Stauffer, SA Bedford, APEX consortium, iPSYCH-autism consortium, R Romero-Garcia, J Grove, AD Børglum, H Martin, S Baron-Cohen, RAI Bethlehem, V Warrier

    Contribution of autosomal rare and de novo variants to sex differences in autism.

    DOI: http://doi.org/10.1016/j.ajhg.2025.01.016
    Journal: Am J Hum Genet
    E-pub date: 6 Mar 2025
    Authors: M Koko, FK Satterstrom, Autism Sequencing Consortium, APEX consortium, V Warrier, H Martin

    Cell line specific alterations in genes associated with dopamine metabolism and signaling in midbrain dopaminergic neurons derived from 22q11.2 deletion carriers with elevated dopamine synthesis capacity.

    DOI: http://doi.org/10.1016/j.schres.2022.05.010
    Journal: Schizophr Res
    E-pub date: 1 Nov 2024
    Authors: MJ Reid, M Rogdaki, L Dutan, B Hanger, K Sabad, R Nagy, D Adhya, S Baron-Cohen, G McAlonan, J Price, AC Vernon, OD Howes, DP Srivastava

    Using organoids to model sex differences in the human brain

    DOI: http://doi.org/10.1016/j.bpsgos.2024.100343
    Journal: Biol Psychiatry Glob Open Sci
    E-pub date: 1 Sep 2024
    Authors: A Pavlinek, D Adhya, A Tsompanidis, V Warrier, AC Vernon, M Lancaster, J Mill, DP Srivastava, S Baron-Cohen

    Corrigendum: Virus-Induced Maternal Immune Activation as an Environmental Factor in the Etiology of Autism and Schizophrenia.

    DOI: http://doi.org/10.3389/fnins.2022.943903
    Journal: Front Neurosci
    E-pub date: 1 Aug 2022
    Authors: A Massrali, D Adhya, DP Srivastava, S Baron-Cohen, MR Kotter

    Virus-Induced Maternal Immune Activation as an Environmental Factor in the Etiology of Autism and Schizophrenia.

    DOI: http://doi.org/10.3389/fnins.2022.834058
    Journal: Front Neurosci
    E-pub date: 1 Aug 2022
    Authors: A Massrali, D Adhya, DP Srivastava, S Baron-Cohen, MR Kotter

    FGF2 dysregulation induces atypical neural rosette formation in autism

    DOI: http://doi.org/10.1016/j.euroneuro.2021.10.052
    Journal: European Neuropsychopharmacology
    E-pub date: 1 Dec 2021
    Authors: D Adhya, L Dutan, D Srivastava, S Baron-Cohen

    Atypical Neurogenesis in Induced Pluripotent Stem Cells From Autistic Individuals.

    DOI: http://doi.org/10.1016/j.biopsych.2020.06.014
    Journal: Biol Psychiatry
    E-pub date: 1 Mar 2021
    Authors: D Adhya, V Swarup, R Nagy, L Dutan, C Shum, EP Valencia-Alarcón, KM Jozwik, MA Mendez, J Horder, E Loth, P Nowosiad, I Lee, D Skuse, FA Flinter, D Murphy, G McAlonan, DH Geschwind, J Price, J Carroll, DP Srivastava, S Baron-Cohen

    Application of Airy beam light sheet microscopy to examine early neurodevelopmental structures in 3D hiPSC-derived human cortical spheroids.

    DOI: http://doi.org/10.1186/s13229-021-00413-1
    Journal: Mol Autism
    E-pub date: 22 Jan 2021
    Authors: D Adhya, G Chennell, JA Crowe, EP Valencia-Alarcón, J Seyforth, NA Hosny, MV Yasvoina, R Forster, S Baron-Cohen, AC Vernon, DP Srivastava

    Environmental Pressures on Transgenerational Epigenetic Inheritance

    DOI: http://doi.org/10.1017/9781108131797.010
    Journal:
    E-pub date: 19 Mar 2020
    Authors: D Adhya, A Massrali, A Paul, M Kotter, J Carroll, D Srivastava, J Price, S Baron-Cohen

    The epigenetics of autism

    DOI: http://doi.org/10.1016/b978-0-12-813796-3.00013-4
    Journal:
    E-pub date: 1 Aug 2019
    Authors: A Massrali, V Warrier, A Paul, D Adhya, DP Srivastava, M Kotter, S Baron-Cohen

    Atypical neurogenesis in induced pluripotent stem cell (iPSC) from autistic individuals

    DOI: http://doi.org/10.1101/349415
    Journal:
    E-pub date: 21 Jun 2018
    Authors: D Adhya, V Swarup, R Nagy, L Dutan, C Shum, E Valencia-Alarcón, KM Jozwik, MA Mendez, J Horder, E Loth, P Nowosiad, I Lee, D Skuse, F Flinter, D Murphy, G McAlonan, D Geschwind, J Price, J Carroll, D Srivastava, S Baron-Cohen

    Understanding the role of steroids in typical and atypical brain development: Advantages of using a “brain in a dish” approach.

    DOI: http://doi.org/10.1111/jne.12547
    Journal: J Neuroendocrinol
    E-pub date: 1 Feb 2018
    Authors: D Adhya, E Annuario, MA Lancaster, J Price, S Baron-Cohen, DP Srivastava